3D atlas

3D models: Z-Anatomy (CC BY-SA 4.0), derived from BodyParts3D © DBCLS (CC BY-SA 2.1 JP); cranial nerves: University of Dundee (CC BY).

The converted GLB files served from /atlas/ are adapted from the Z-Anatomy models (nervous system only; split into one file per structure, decimated, and compressed) and are shared under CC BY-SA 4.0. You may copy and adapt them under the same licence with attribution. Two Z-Anatomy models under non-commercial terms (inner ear, kidney) are not included.

MRI slices and structure labels: Allen Human Reference Atlas - 3D, 2020 (Ding et al.; RRID:SCR_017764; © 2019 Allen Institute for Brain Science; CC BY 4.0); Ding SL et al. (2016) J Comp Neurol 524:3127-3481, doi:10.1002/cne.24080. Template image: ICBM 2009b nonlinear symmetric (Fonov et al. 2009, 2011), © 1993-2004 Louis Collins, McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University (permission to use, copy, modify and distribute with this notice). Tracts (medial lemniscus, medial longitudinal fasciculus, spinothalamic, corticospinal, association bundles): Advanced Atlas of 80 Bundles (Garyfallidis et al. 2017 NeuroImage 170:283-297; CC BY 4.0), curated from the HCP-842 atlas (Yeh et al. 2018 NeuroImage 178:57-68). The periaqueductal grey, internal capsule and pontine longitudinal fibres are derived from these labels (method in the viewer), and the 3D meshes of structures missing in Z-Anatomy were generated from them and placed in the Z-Anatomy model by an affine registration. Slice viewer: NiiVue (BSD-2-Clause).